NEWSLETTER

Home » Publications

Here you will find all public pro-iBiosphere deliverables as well as all scientific publications resulting from the project.

A decadal view of biodiversity informatics: challenges and priorities

Authors: Hardisty A., Roberts D.
TYPE: Journal paper
| STATUS: Published
YEAR: 2013
JOURNAL: BMC Ecology
VOLUME/ISSUE: 13(16)
PUBLISHER: BioMed Central
pro-iBiosphere DERIVED: YES
UPLOADED ON: 18.04.2013 BY: Iliyana Kuzmova

A Framework of Scientific-Cloud for iFlora

TYPE: Journal paper
| STATUS: Published
YEAR: 2012
JOURNAL: Plant Diversity and Resources
VOLUME/ISSUE: 34(6)
pro-iBiosphere DERIVED: NO
UPLOADED ON: 16.12.2012 BY: Iliyana Kuzmova

An appraisal of megascience platforms for biodiversity information

Authors: Dagmar Triebel, Gregor Hagedorn, Gerhard Rambold
JOURNAL: MycoKeys
VOLUME/ISSUE: 5 (2012)
pro-iBiosphere DERIVED: YES
UPLOADED ON: 23.01.2013 BY: Gregor Hagedorn

Biodiversity research in the “big data” era: GigaScience and Pensoft work together to publish the most data-rich species description.

Authors: Edmunds, Scott C., Chris I. Hunter, Vincent Smith, Pavel Stoev, and Lyubomir Penev
TYPE: Journal paper
| STATUS: Published
YEAR: 2013
JOURNAL: GigaScience
VOLUME/ISSUE: 2
pro-iBiosphere DERIVED: YES
UPLOADED ON: 04.11.2013 BY: Iliyana Kuzmova

Bouchout Declaration

Report to the RDA 4th Penary Persistent Object Identifier IG, Amsterdam, September 24, 2014
Authors: Agosti, D.
TYPE: Proceedings paper
| STATUS: Other
YEAR: 2014
pro-iBiosphere DERIVED: YES
UPLOADED ON: 25.09.2014 BY: Donat Agosti

D1.2.2 Management report 2

Authors: Naturalis
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: February 2013
DELIVERABLE NUMBER: D1.2.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.03.2013 BY: Stephanie Morales

D1.2.3 Management report 3

Authors: Naturalis
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: May 2013
DELIVERABLE NUMBER: D1.2.3
pro-iBiosphere DERIVED: NO
UPLOADED ON: 05.06.2013 BY: Iliyana Kuzmova

D1.2.4 Management report 4

Authors: Naturalis
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D1.2.4
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.09.2013 BY: Iliyana Kuzmova

D1.2 Management report 1

Authors: Naturalis
TYPE: Deliverable
| STATUS: Published
YEAR: 2012
DUEDATE: November 2012
DELIVERABLE NUMBER: D1.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.12.2012 BY: Pavel Stoev

D2.1.1 Report on ongoing biodiversity related projects, current e-infrastructures and standards

Authors: D. Agosti, L. Penev, T. Catapano, S. Eckert, T. Georgiev, Q. Groom, A. Güntsch, G. Hagedorn, P. Hovenkamp, D. Kirkup, E. Kralt, D. Mietchen, J. Miller, S. Sierra
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: June 2013
DELIVERABLE NUMBER: D2.1.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.07.2013 BY: Eva Kralt

D2.1.2 Towards a draft strategy for increased cooperation

Authors: D. Agosti, D. Patterson, G. Hagedorn; T. Catapano, Q. Groom, A. Güntsch, D. Kirkup, E. Kralt, D. Mietchen, R. Morris, A. Paton, L. Penev, S. Sierra
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: September 2013
DELIVERABLE NUMBER: D2.1.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.10.2013 BY: Iliyana Kuzmova

D2.2 Report on user feedback

Authors: RBGK
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D2.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 02.09.2013 BY: Iliyana Kuzmova

D2.3 The Use of e-Tools among Producers of Taxonomic Knowledge (Proof of concept report on the use of e-tools)

Authors: NBGB
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D2.3
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.09.2013 BY: Iliyana Kuzmova

D2.4.1 Draft policy on Open Access for data and information (1)

Authors: Plazi
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D2.4.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.09.2013 BY: Iliyana Kuzmova

D2.4.2 Draft policy on Open Access for data and information

Authors: W. Egloff, D. Agosti, R. A. Morris, Q. Groom, A. Güntsch, P. Hovenkamp, J.-W. Mantel, S. Sierra, D. Mietchen, A. Paton, D. Patterson, P. Stoev, J. Macklin
TYPE: Deliverable
| STATUS: Published
YEAR: 2014
DUEDATE: July
DELIVERABLE NUMBER: D2.4.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 03.09.2014 BY: Donat Agosti

D.3.1 Towards a set of Best Practices on Editorial Policies for the curation and publication of fundamental biodiversity data and information in an e-environment

Authors: Naturalis
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: May 2013
DELIVERABLE NUMBER: D.3.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 05.06.2013 BY: Iliyana Kuzmova

D3.2.1 Concept paper for involvement of individual experts, commercial vendors, and citizen scientists

Authors: Plazi, Naturalis, BGBM, Pensoft, NBGB
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: May 2013
DELIVERABLE NUMBER: D3.2.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 05.06.2013 BY: Iliyana Kuzmova

D3.2.2 Report on the state and quality of biosystematics documents and survey reports

Authors: Plazi
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D3.2.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.09.2013 BY: Iliyana Kuzmova

D3.3.2. Report on progress during the coordination process of partners and non consortium partners (regarding interoperability of markup approaches for literature)

Authors: Mietchen, D.
TYPE: Deliverable
| STATUS: Published
YEAR: 2014
DUEDATE: April
DELIVERABLE NUMBER: D3.3.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 12.09.2014 BY: Donat Agosti

D.4.2 Strategy for improvement & interoperability of the XML schemas

Authors: Plazi, Pensof, BGBM, NBGB, RBGK
DUEDATE: January
DELIVERABLE NUMBER: D4.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 13.09.2014 BY: Donat Agosti

D5.1.1 Web-based platform and Wiki

Authors: Pensoft
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: December 2012
DELIVERABLE NUMBER: D5.1.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 15.03.2013 BY: Iliyana Kuzmova

D5.2.1.3 Electronic newsletter 3

Authors: Pensoft
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D5.2.1.3
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.09.2013 BY: Iliyana Kuzmova

D5.2.1 Report on dissemination, communication and public awareness

Authors: Sigma
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D5.2.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 02.09.2013 BY: Iliyana Kuzmova

D6.3.1 Report on diversity and strengths of existing business plans and discussion of sustainability

Updated on a six months basis
Authors: Sigma Orionis
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: February 2013
DELIVERABLE NUMBER: D6.3.1
pro-iBiosphere DERIVED: NO
UPLOADED ON: 04.03.2013 BY: Stephanie Morales

D6.3.2 Report on diversity and strengths of existing business models and discussion of sustainability

Authors: Sigma
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: August 2013
DELIVERABLE NUMBER: D6.3.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 02.09.2013 BY: Iliyana Kuzmova

Electronic Newsletter 6

Authors: Pensoft
TYPE: Deliverable
| STATUS: Published
YEAR: 2014
DUEDATE: Aug 2014
DELIVERABLE NUMBER: D5.2.1.6
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.09.2014 BY: Pro- iBiosphere

Enriched biodiversity data as a resource and service

Authors: Vos R, Biserkov J, Balech B, Beard N, Blissett M, Brenninkmeijer C et al.
TYPE: Journal paper
| STATUS: Published
YEAR: 2014
JOURNAL: Biodiversity Data Journal
VOLUME/ISSUE: 2
PUBLISHER: PenSoft
pro-iBiosphere DERIVED: YES
UPLOADED ON: 16.06.2014 BY: Pro- iBiosphere

Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data

Authors: Stoev P, Komerički A, Akkari N, Liu S, Zhou X, Weigand A, Hostens J, Hunter C, Edmunds S, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Faulwetter S, Smith V, Penev L
TYPE: Journal paper
| STATUS: Published
YEAR: 2013
JOURNAL: Biodiversity Data Journal
VOLUME/ISSUE: 1
pro-iBiosphere DERIVED: YES
UPLOADED ON: 04.11.2013 BY: Iliyana Kuzmova

Final Conference Event Report

Authors: Stephanie Morales
TYPE: Proceedings paper
| STATUS: Published
YEAR: 2014
DUEDATE: June 2014
pro-iBiosphere DERIVED: YES
UPLOADED ON: 26.06.2014 BY: Stephanie Morales

Identifying Audiences of E-Infrastructures - Tools for Measuring Impact

TYPE: Journal paper
| STATUS: Published
YEAR: 2012
JOURNAL: PLoS ONE
VOLUME/ISSUE: 7(12)
pro-iBiosphere DERIVED: NO
UPLOADED ON: 16.12.2012 BY: Iliyana Kuzmova

Implementation of TaxPub, an NLM DTD extension for domain-specific markup in taxonomy, from the experience of a biodiversity publisher

TYPE: Proceedings paper
| STATUS: Published
pro-iBiosphere DERIVED: YES
UPLOADED ON: 30.10.2012 BY: Pavel Stoev

Open exchange of scientific knowledge and European copyright: The case of biodiversity information

Authors: Egloff W, Patterson DJ, Agosti D, Hagedorn G
JOURNAL: ZooKeys
VOLUME/ISSUE: 414
PUBLISHER: Pensoft Publishers
pro-iBiosphere DERIVED: YES
UPLOADED ON: 09.06.2014 BY: Margarita Grudova

Open exchange of scientific knowledge and European copyright: The case of biodiversity information

Authors: Willi Egloff, David J. Patterson, Donat Agosti, Gregor Hagedorn
TYPE: Journal paper
| STATUS: Published
YEAR: 2014
JOURNAL: ZooKeys
VOLUME/ISSUE: 414
PUBLISHER: PenSoft
pro-iBiosphere DERIVED: YES
UPLOADED ON: 09.06.2014 BY: Pro- iBiosphere

pro-iBiosphere project periodic report

Authors: pro-iBiosphere consortium
TYPE: Deliverable
| STATUS: Published
YEAR: 2013
DUEDATE: 31 October 2013
pro-iBiosphere DERIVED: NO
UPLOADED ON: 01.11.2013 BY: Iliyana Kuzmova

Report on dissemination, communication and public awareness

Authors: Camille Torrenti (Sigma Orionis)
TYPE: Deliverable
| STATUS: Published
YEAR: 2014
DUEDATE: August 2014
DELIVERABLE NUMBER: D522
pro-iBiosphere DERIVED: NO
UPLOADED ON: 27.08.2014 BY: Camille Torrenti

Report on diversity and strengths of existing business plans and discussion of sustainability (3)

Authors: SIgma Orionis, Royal Botanic Gardens Kew
TYPE: Deliverable
| STATUS: Published
YEAR: 2014
DUEDATE: February 2014
DELIVERABLE NUMBER: D6.3.3
pro-iBiosphere DERIVED: NO
UPLOADED ON: 20.05.2014 BY: Stephanie Morales

Scientific names of organisms: attribution, rights, and licensing

Authors: Patterson, D. Egloff, W. Agosti, D. Eades, D. Franz, N. Hagedorn, G. Rees, J.A. Remsen, D.R.
TYPE: Journal paper
| STATUS: Published
YEAR: 2014
JOURNAL: BMC Research Notes
VOLUME/ISSUE: 7:79
DUEDATE: July
DELIVERABLE NUMBER: D.2.4.2
pro-iBiosphere DERIVED: NO
UPLOADED ON: 03.09.2014 BY: Donat Agosti

Some thoughts after the Cusco meeting

Authors: Agosti, D.
TYPE: Journal paper
| STATUS: Published
YEAR: 2014
JOURNAL: Hamuli
VOLUME/ISSUE: 5/2)
PUBLISHER: International Society of Hymenopterists
pro-iBiosphere DERIVED: NO
UPLOADED ON: 11.09.2014 BY: Donat Agosti

The Future of Botanical Monography: Report from an international workshop, 12–16 March 2012, Smolenice, Slovak Republic

Authors: Crespo A, Crisci JV, Dorr LJ, Ferencová Z, Frodin D, Geltman DV, Kilian N, Linder HP, Lohmann LG, Oberprieler C, Penev L et al.
TYPE: Journal paper
| STATUS: Published
YEAR: 2013
JOURNAL: TAXON
VOLUME/ISSUE: 62(1)
pro-iBiosphere DERIVED: NO
UPLOADED ON: 21.02.2013 BY: Iliyana Kuzmova

Tropical Plant Collecting: From the Field to the Internet

Authors: Mori S. A., Berkov A., Gracie C. A., Hecklau E. F.
PUBLISHER: the Association for Tropical Biology & Conservation
pro-iBiosphere DERIVED: NO
UPLOADED ON: 30.01.2013 BY: Iliyana Kuzmova
flag big

This project has received funding from the European Union’s Seventh Programme for research, technological development and demonstration under grant agreement No 312848